Lab Updates: March/April 2017

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The last couple of months have flown by with lots of goings on amongst all of us here on team MacroBird.

Data Collection

Throughout March, we were joined by two postgraduate students from the department of Animal and Plant Sciences, both undertaking projects utilising the data we are collecting from museum specimens.
As part of their research projects, both Jade and Sarah spent a few weeks with us at the Natural History Museum in Tring.

JadeJade’s project is looking at plumage diversity across parrots (the family Psittacidae)- one of the largest groups in our taxonomy. The photography side of our project has been initially focussing on the passerines, so this was also our first attempt at imaging birds outside this group using our current setup. Whilst the majority of passerines fit within our small photography calibration (with some obvious exceptions- the immense tail feathers of some birds of paradise, for example), the Psittacidae encompass a huge variety in size. From the tiny hanging parrots, measuring only a few centimeters in length to the huge scarlet macaw, only just fitting within the limits of our light tent. Working our way through the family also highlighted the extraordinary spectrum to be seen within its plumage- from bright, vivid primary colours, to pastel gradients and dark ombres… just amazing.

parrots

Photographing the Psittacidae also raised a couple of interesting issues we haven’t really had to consider before. As many species of parrots have made popular pets, a fairly significant proportion of the specimens within the museum’s collections were either bred or lived in captivity. As diet can be a factor in plumage colouration, birds kept in captivity may develop colour abnormalities that could produce erroneous results if included in our dataset.parrot As such, we have had to be extra careful in interpreting the information provided on specimen labels to try and ensure only wild specimens are included in our study.

For much the same reason as their proliferation in captivity, a number of species are now classed as endangered (extinct species are not currently being included in our study), including the wonderful kakapo, but can still be included in our research thanks to the museum’s distinct E&E collection. It’s a huge privilege to work with such rare material and whilst our attitudes to collecting today have, thankfully, evolved and are now held to modern ethical standards and legislation, it does bring home the importance of preserving these existing historical collections for future research.

Furnarius rufus

Our scan of a Rufous hornero bill alongside an example of nest built by ovenbirds of this genus. Photograph by Darios Anches, CC BY-SA 2.0

SarahSarah’s work, concerned with the scanning side of our project, will be focusing on the ovenbirds (Furnariidae), a large family of primarily South American passerines, widely known for their incredible nest-building skills. Despite approaching 90% of world bird species processed for the bill component of our study, the ovenbirds have remained one of the least represented taxa in our dataset as a result of re-curation. Sarah’s project gave us the opportunity to correct this, with us successfully having now scanned every available species from the NHM’s collections. With a renewed push on scanning, this has seen a new batch of 3D scans available for landmarking on our crowdsourcing site markmybird.org for citizen scientists (old and new!) to landmark for inclusion within our study.

Alongside these individual projects, our usual data-collection has been continuing at pace. With two set-ups, able to process a wider variety of specimen sizes, we have been steadily working our way through all possible passerine families. Ranging from birds of paradise to weavers, parrotbills to waxbills over the last few weeks alone, our completion percentage has seen a real jump to:

22,047 specimens photographed: we are selecting up to 6 specimens of each species, both male and female
132,480 photos taken: six photographs- dorsal, ventral and lateral in both UV and human visible spectrums- of every selected specimen (with a few additional ones for extra large birds)
Approaching 46% of world bird species

Mark My Bird & Beak of the Week

The number of citizen scientists now subscribed to our citizen science site is around the 1700 mark and we are slowly nearing our targets. Alongside our usual day-to-day landmarking and weekly twitter competition #beakoftheweek, we also held a markmybird-athon, linking with students from the University of South Florida, where Dr Jen Bright- one of our original postdocs- is now based, for an evening of landmarking. It’s great to see how our data and website are being used to assist in teaching, engaging with science or any number of other uses people can think of.

A large portion of our data is now available in full via the Natural History Museum’s data portal, with lots more of scans available via our own website– we hope this resource will be used by others for a range of uses and to assist in answering lots of questions beyond our current study. If you’ve used our data, we’d love to hear about it!

Other News

3D printed bills

In other goings on, our group took part in the University of Sheffield’s annual Discovery Night- a brilliant opportunity to present our project to future generations of researchers. We had a great time talking about macroevolution, the values of natural history collections, the joys of 3D printing and the importance of citizen science for wide-ranging projects such as ours.

You can learn more about the event and our offering in a recent blog post, here.

 

Lastly for this month, team PhD students Angela Chira and Emma Hughes both presented posters discussing their projects and findings to-date- congratulations all round!

Angela & Emma

 

 

Discovery Night 2017

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discoverynightMarch saw the return of the University of Sheffield’s annual Festival of Science and Engineering. For the fifth year running this included Discovery Night, a family outreach evening demonstrating current research within the departments of science, engineering and medicine through demonstrations, talks and hands-on activities. Our research group is usually based in two places- the university and the Natural History Museum in Tring- so this seemed like a perfect opportunity to bring ourselves and the various sides of our project together to take part in the department of Animal and Plant Sciences’ (APS) offerings.

Despite the publication of our first wide-ranging paper earlier this year, we are not yet finished with data collection. Our aim, to 3D scan the bill and photograph the plumage of as many of the world’s approx. 10,000 species of bird, is a huge undertaking so communicating the scale and scope of this work seemed an interesting approach to take  when sharing our research.

birdspecimensWhilst we aren’t able to remove the irreplaceable specimens we use everyday from museum collections, we are lucky enough to have a small selection of data-less bird skins for testing our methods and for outreach. Museum’s will generally only keep natural history specimens within their research collections if they are adequately labelled with associated information (such as taxonomy, locality, who collected it and when) that makes them useful for research and/or identifiable as historically significant. As such, material will occasionally be deemed unsuitable for these needs but ideal for alternative uses, such as inclusion within handling collections- where material is  set aside to be used in teaching activities.

studyskins2Museum collections are absolutely essential in our work and form an incredible archive for research, interest and education so it was only fitting they took pride of place in our display. Not only are they wonderful to look at up close, illustrating some key points in our study, but they also act as a brilliant starting point in explaining why these primarily historical resources can be such an important resource for the future.

Much of the last two years has been spent extracting  the data we need from these specimens to allow us to explore evolutionary diversity amongst species through 3D scanning and photography.

sarahscanningScanning bird beaks, whilst allowing us to generate incredibly detailed digital replicas, is a hugely varied undertaking- one that requires lots of practice to tackle the bristles, feathers, damaged keratin, hooks, casques, curves and glossy surfaces that we encounter every day working with specimens. We gave scanning demonstrations throughout the evening, showing the process of imaging a bill from a variety of angles to capture a full three-dimensional model. We were also given a run for our money by some particularly talented members of the public!

markmybirdGetting people involved with our research via the next stage of our work, landmarking, is another important point for us. To turn a detailed 3D model into data that we can compare and interpret across all species, we need to place key points on every single scan. This is a time-consuming but engaging task and one we want citizen scientists of all ages to be able to try. Our crowdsourcing site – markmybird.org – has so far seen an incredible input from interested people all over the world, but there is still plenty left to get involved with!

In recent months we’ve also been experimenting with 3D printing, attempting to create accurate physical models of the bills we image. After some trial and error and with the help of experienced staff within the APS department, we were aultimakerble to create models of a selection of bills- much better for handling and demonstrating than the real thing!

We were lucky enough to have the 3D printer in action throughout the evening, slowly but surely creating a model of a sturdy corvid bill. It’s been brilliant to see our digital models taking physical form once again, providing a visual tool for displaying the variety in the form and shape of bird bills. Each model of the size pictured below takes around four hours to print. A life-size replica of a shoebill beak, for example, would take upwards of 24hours!

3DprintedbillsAlongside these demonstrations of our work we also had bill-weirdness Top Trumps, a plumage identification computer game, videos showing our work based in the Natural History Museum’s collections and an opportunity to take your own ultraviolet plumage shots. It was great to speak with so many interested visitors (with so many brilliant questions) and have the chance to show what we’ve been up to- whether as visitors or demonstrators, hopefully we’ll be back next year!

teamdiscoverynight

 

 

Lab Updates February 2017

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It’s been an exciting few weeks for all of us here at Team Macrobird with February seeing the first paper from our project published in Nature. We’re thrilled to finally have this out in print after over two years of data collection, analysis and the hard work of citizen scientists from around the world. We’ve already received some wonderful feedback and mentions in publications from the New York Times to the Yorkshire Post. You can learn more about the paper and our findings in our recent blog post or view it in full here.Nature issueAlongside this, the first portion of our data has now been made available via the Natural History Museum’s Data Portal– a dedicated space to ensure the museum’s collections, research and associated data is accessible to everyone. Whilst our website markmybird.org provides a gallery of approaching 8,000 3D scans, the data portal provides more in-depth data for an initial 2,028 specimens, comprising raw scan data and multiple landmarks for each as well as an adjoining spreadsheet featuring sex, museum registration number and taxonomic details. By making this data freely available we hope that more questions regarding beak shape can be investigated and answered by researchers, students and anyone with an interest well into the future.

NHM Data Portal

We’ve also had a new research assistant join our team collecting data at the Natural History Museum at Tring- Michael Jardine will be helping photograph the plumage of the world’s birds for the next six months. So too, Yichen He began his PhD towards the end of last year, working with PI Gavin Thomas to characterise phenotypic data for MicroCT scans of zebra finches.

Data collection: 3D scanning & UV photography

Whilst our first paper explores bill shape at genus level, we are still aiming to build a far more comprehensive dataset of bill and plumage information- covering as many of the approximately 10,000 extant species of bird as possible. This means data collection will be continuing full force, using the Natural History Museum’s ornithology collections at Tring.

Scanning has been going ahead in small increments this month with a number of new world warblers, australian robins and ovenbird species soon to be added to our site. Next month however, we aim to have a new push to complete the Furnariidae- more on this later.

sulphur crested cockatooIn contrast, towards the end of this month we moved over to having two photography light tents in operation for the first time. Not only will this increase the number of specimens we are able to image but the new, second light tent will also allow us to photograph larger passerines and many of the non-passerine families we choose to focus on.

Even better, this month we reached a significant milestone- with 25% of all world bird species imaged. This equates to a whopping:

12265 specimens photographed: we are selecting up to 6 specimens of each species, both male and female
73590 photos taken: six photographs- dorsal, ventral and lateral in both UV and human visible spectrums- of every selected specimen
22.68% of families
29.41% of genera
25.94% of species

MarkMyBird

Having only just celebrated the 1000th volunteer signing up to our crowdsourcing site markmybird.org last month, February has seen an amazing increase in new members with many first-time landmarkers contributing to our ongoing study through citizen science. We now have in excess of 1400 registered users with over 1000 bills landmarked this month alone, brilliant stuff!

great billed hermit

Landmarks placed along the beak edge of the Great-billed hermit (Phaethornis malaris), a species of hummingbird.

However, with scans for almost 80% of world bird species uploaded and ready to view on our website, the hard work isn’t over yet! If you’ve just heard about our project, have an interest in ornithology, are interested in the way historical museum specimens are used in modern science or are just curious to see what it involves to become a citizen scientist, head on over! We’ve even made a short video, showing the basics of landmarking a bill from beginning to end:

#BeakoftheWeek

Maui parrotbillOur twitter competition #BeakoftheWeek takes place every Wednesday- a chance to test your bird identifying skills against our 3D models. A favourite pick from this month was the Maui parrotbill (Pseudonestor xanthophrys), an unusual and misleading bill shape that really kept people guessing! Everyone is welcome to join in and a place on our leaderboard (as well as bragging rights) is up for grabs…

Other news

Macrobird post-doc Chris Cooney was lucky enough to undertake a research visit to the University of Chicago- spending time with Trevor Price and his lab group before scanning some hard-to-find species from the collections at the world famous Field Museum. You can read more about Chris’ American adventure here.

Finally, congratulations are in order for Will Wood and Louie Rombaut, both of whom undertook summer research projects last year as part of the University SURE (Sheffield Undergraduate Research Experience) scheme. Both Will and Louie spent time with us collecting data at the Natural History Museum in Tring and presented their findings at a recent open evening.

louie, will, chris

Mega-evolutionary dynamics of the adaptive radiation of birds

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Nature bills

The idea to 3D scan the bills of the world’s 10,000 bird species from museum collections has always seemed like an ambitious undertaking. However, after two years of data collection, months of analysis and the input of hundreds of citizen scientists, the first study resulting from our work was published in Nature last month.

This initial, wide-ranging exploration of bill diversity, compared over 2000 species from across all genera, considering the full range of present-day bill shapes.

The diversity we see in bill shape today is extraordinary and studying this characteristic can tell us a lot about species and how they interact with their environment- from foraging, hunting and eating food, to preening and nest building. Traditional methods of gathering information relating to bill form have often relied on length, depth and width measurements alone, missing many key elements of shape, such as curvature. By 3D scanning bills, we have been able to capture far more detailed information, providing a true reflection of bill diversity.

It would have been impossible to collect this information from birds in the wild so our study has been reliant on the incredible ornithology collections at Manchester Museum and the Natural History Museum in Tring. These archives of biodiversity have allowed us to create fantastically detailed models through access to such a broad variety of species, alongside curatorial expertise and work space.

One of the most novel aspects of our study was the way in which much of our initial data- the 3D scans- was processed through the input of citizen scientists from around the world. With each scan requiring landmarking by at least 3 different people, this in itself was a huge task and one that would not have been possible without such a collaborative effort. By helping us place key points and trace edges on every scanned bill, online volunteers assisted in turning these hugely complex 3D models into data that could then be analysed.

From this we have been able to highlight that the majority of bill diversification evolved quickly and, once extremes of shape were reached, the amount of change slowed down significantly as birds began to fill increasingly narrow ecological niches. As a result of this initial fast change and huge variety of form, birds have been able to exploit the equally wide range of habitats and sources of food.

The full paper can be read here and, excitingly, has also received some fantastic press attention, including a discussion of our findings with project PI Dr Gavin Thomas on both the Nature podcast and BBC Inside Science (interview starts at 20:00 minutes) – if you prefer a good listen, rather than a good read. A selection of our online coverage is listed here:

Audubon – Post-docs Dr Chris Cooney and Dr Jen Bright spoke to Audubon magazine about our findings and how they build upon our previous understanding of bill diversity.
BBC Science & Environment – ‘How birds of a feather evolved together’
New York Times – ‘Finding the Speed of Evolution in a Study of Bird Beaks’
Natural History Museum – Our study wouldn’t have been possible without the incredible ornithology collections at the Natural History Museum. This statement highlights our reliance on this resource as well as how our data can be used in the future.
University of Sheffield – A summary of our project and findings as part of the Department of Animal & Plant Sciences at the University of Sheffield.

If reading about our work has caught your interest, it’s not too late to contribute. Our crowdsourcing site markmybird.org is still very much up-and-running as we continue to increase our data relating to all extant species. Whether you want to browse our scan gallery or have a go at landmarking, everyone is welcome.

Chicago: lab visits, bird collections & the field museum

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Chris in Chicago

In early January, I headed stateside to begin a month-long visit to the University of Chicago with the main aim of spending some time working with Trevor Price, a world-leading expert on speciation, species diversity and colour vision in birds. Trevor began his research career studying Darwin’s finches on the Galapagos Islands with Peter and Rosemary Grant, and since then has gone on to have a long and distinguished career working on a huge range of Chris scanquestions related to the ecology and evolution of birds. Many of these insights were synthesised in his 2008 book “Speciation in birds”, which discusses the factors regulating the formation of new bird species for almost every conceivable angle. The wide-ranging nature of Trevor’s approach to understanding bird evolution is also reflected in the diversity of his lab group, whose current research interests stretch from understanding competitive interactions between ants and birds in the Indian Himalayas through to the role of chromosomal rearrangements in the formation of new bird species. The opportunity to spend time in such a vibrant research group that is doing so much exciting research was a great privilege, and I would like to say a big thank you to Trevor Price and his lab group for their hospitality and for the huge amount of inspiring discussions during his visit. A special thank you must also go to Macrobird PI Gavin Thomas, who encouraged and supported me in this visit from first to last. Thank you to everyone who made the visit such a success!

Field Museum

Aside from talking all things evolutionary with Trevor Price and his lab group, while in Chicago I also took the opportunity to visit the world-famous Field Museum of Natural history and add to the ever-expanding 3D beak-shape dataset. The Field Museum is one of the most prominent public museums in the world and is also home to one of the largest collections of natural history specimens. Like many natural history collections, a vast number of these specimens are birds, providing the perfect opportunity to locate and scan several hard-to-find species that are not represented in UK collections. In total I managed to add an extra 18 species to the dataset while out in Chicago, including several species of parrot (such as the blue-headed macaw, Primolius couloni) and Newell’s shearwater (Puffinus newelli) .

Chicago skyline

As a slight aside, one interesting—and perhaps slightly unfortunate—fact about the Field Museum is that every year their bird collection grows significantly owing to the fact that many hundreds of thousands of migrating birds perish after colliding with buildings in Chicago’s famous skyline. Many of these unfortunate birds are collected by museum volunteers or members of the public and then passed on to the Museum, who endeavour to preserve as many as possible in an effort to make the best of a bad situation. Because of the scale of the problem, the City of Chicago now takes steps to prevent as many bird collisions as possible, by modifying buildings and people’s behaviour, including encouraging workers to ensure office lights remain off overnight during migration periods. Again, the opportunity to spend time working at the Field Museum and to learn more about the role of the Museum in the fight against bird collisions was a huge privilege – a big thank you to Shannon Hackett, John Bates, Ben Marks at the Field Museum and Graham Slater at the University of Chicago for making that possible.

Happy New Year-ish!: Lab Updates January 2017

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It’s been another busy few months for all of us here on team MacroBird and time has flown since our last update at the end of the Summer. Team changes, data collection, paper writing, outreach and PhD-beginnings have kept us occupied as we start another year of all things macroevolution!

Data collection will be continuing throughout 2017 using the fantastic ornithology collections at the Natural History Museum at Tring. With two remaining research assistants and a new member joining the team, both scanning and photography will be pushing on over the coming months. Emma Hughes, one of our original RAs, is now based with the rest of the team in Sheffield, beginning a NERC-funded PhD exploring the impact of global change on avian diversity.

IMG_8589At the end of September we took part in Science Uncovered- the Natural History Museum’s European Researcher’s Night event- for the second year running. MacroBird PI Dr Gavin Thomas gave a talk about our research and crowdsourcing project whilst we demonstrated our use of the collections with our scanners, specimens and citizen science website. You can read more about the night here.


Data collecting in Tring: 3D scanning & UV photography

Having achieved approaching 90% of species processed (with over 75% successfully scanned), we’re well on our way to completing the scanning component of our project. The remaining species that are available within the Natural History Museum’s collections will be scanned over the coming months and added to our crowdsourcing site MarkMyBird, increasing the diversity of bills available to view and landmark through our galleries. Remaining target families include the Tyrant flycatchers (Tyrannidae) and Ovenbirds (Furnariidae).

Finches

Clockwise from top left: I’iwi or Scarlet honeycreeper (Drepanis coccinea), Brown-capped rosy finch (Leucosticte australis), Long-tailed rosefinch (Carpodacus sibiricus), Goldfinch (Carduelis carduelis)

As such, data collection has had a shift of focus in recent months as our efforts have been turned from scanning to photography. After some alterations to the equipment we are using whilst imaging the plumage (male and female) of every extant species in both the human visible and ultraviolet ranges we continue to photograph our way through the passerines. We are currently progressing through the brilliantly varied Fringillidae family, including everything from the European goldfinch (Carduelis carduelis) to the fascinating Hawaiian honeycreepers.

MarkMyBird 

Fratercula arctica- Atlantic puffinOur crowdsourcing site markmybird.org still needs you! We are aiming to scan the bills of as many as possible of the world’s 10,000 species of bird and now have almost 80% of this total uploaded and ready for you to view and landmark on our dedicated crowdsourcing website. In order to include these incredibly detailed 3D scans in our study, we need citizen scientists to help us ‘landmark’ these models, placing key points and traMagpie2cing curves and edges. The process allows you to get up close to this fascinating and massively variable area of avian anatomy and contribute to this wide ranging research. We have everything from extinct and endangered species to old favourites such as the Atlantic puffin (Fratercula arctica– left) and the Eurasian magpie (Pica pica– right) to explore. This month we reached a fantastic milestone, exceeding 1000 registered users on the site- brilliant stuff! 

#BeakoftheWeek

Our weekly twitter competition #BeakoftheWeek is still going strong with some especially unusual choices in recent weeks- including the little spotted kiwi (Apteryx owenii), as pictured below. Anyone is welcome to join in and have a guess every Wednesday- you might even be first to get the correct answer and make your way onto our extremely prestigious leader board.

kiwi

Publications

After over two years of data collection, thousands of 3D scans (and even more specimens assessed, measured and processed), the contributions of scores of citizen scientists and months of analysis, we’re thrilled to say that the first paper resulting from this project has been accepted for publication. The paper will available to read very soon and we’ll be sure to make lots of noise when the publication date arrives- watch this space!

Images

All scans (c) of Team Macrobird and The Natural History Museum (London and Tring)
Finch photographs: credits provided.

1000 citizen scientists- thank you!

facebooktwitterCitizen Science- Thank You

Since our crowdsourcing site markmybird.org launched in September 2015 we have had scores of brilliant citizen scientists offer their time, skills and curiosity to this research project.

This month our 1000th citizen science volunteer signed up to the site- a fantastic milestone!

This year will see the publication of our first paper resulting from this study, an achievement that has been aided in no small part by this generosity from interested individuals. Every landmarked scan has helped us reach this stage and will assist in increasing our understanding of avian evolution.

The work isn’t over yet though- data collection is still continuing in museum collections and more scans means more landmarking! Whether you want to learn more about research of this nature, wonder about the ways museum specimens are utilised in modern science, are interested in the amazing diversity of birds or just curious about what we’re up to, markmybird has lots to explore for everyone. No matter what your background, age or experience, anyone can sign-up and have a go, so head on over!

Southern fulmar (Fulmarus glacialoides)

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Meet the Southern fulmar (Figure 1), Fulmarus glacialoides, one of the most elegant seabirds from the Family Procellariidae. Also known as silver-grey fulmar and Antarctic fulmar, this species is found in plentiful abundance in the Southern Ocean, with an estimated breeding population of “several million” around the Scotia Arc area and the Antarctic Peninsula (Crozall et al., 1984).

The Southern fulmar (Fulmarus glacialoides) in flight, taken in Tasmania, Australia. Author: JJ Harrison. Creative Commons Attribution-Share Alike 3.0.

Figure 1: The Southern fulmar in flight, taken in Tasmania, Australia. Author: JJ Harrison (CC BY-SA 3.0).

The family Procellariidae also comprises the gadfly petrels (Pterodroma spp.), the prions (Pachyptila spp. and Halobaena caerulea), and the shearwaters (mostly of the genera Calonectris and Puffinus).

The taxon was first described by Sir Andrew Smith (Figure 2), a Scottish naturalist from the late 19th Century, based on a specimen collected from the Cape of Good Hope. The Southern fulmar’s first taxonomic classification placed it in the genus Procellaria. However, in 1949, this was reclassified to Fulmarus, the same genus as its sibling, the Northern fulmar (F. glacialis), a revision justified by mitochondrial DNA (cytochrome b) phylogenies (Nunn and Stanley, 1998). Although similar in appearance to its namesake, there is no overlap in area where both species occur.

Antique Lithograph from Andrew Smith’s "Illustrations of the Zoology of South Africa", published in 1838-49, London.

Figure 2: Antique lithograph from Sir Andrew Smith’s “Illustrations of the Zoology of South Africa“, published in 1838-49, London.

With their large distribution, many Southern fulmars migrate north during winter months to areas along the coasts of the Falkland Islands, South America, South Africa, Australia and New Zealand, with the occasional migration to tropical latitudes (Creuwels et al., 2007). They somewhat resemble gulls in their appearance, with a white head, silver-grey neck and mantle, which gradually becomes darker towards the back and upperwings. Its bill was featured on Beak of the Week on the 16th of November. Though not visible from the scan, the beak is typically pale pink with a black tip. Large nasal tubes on the top of the bill cover the blue-grey tubular nostrils.

Southern Fulmars feeding in the Gerlache Strait, Antarctica. Creative Commons Attribution-Share Alike 2.0 Generic license. Liam Quinn from Canada.

Figure 3: Southern fulmars feeding in the Gerlache Strait, Antarctica. Author: Liam Quinn (CC BY-SA 2.0).

The Southern fulmar breeds on steep rocky slopes and cavities on precipitous cliff edges, feeding on fish (normally Pleuragramma antarcticum and Electrona antarctica), Antarctic krill (Euphausia superba) and various squid species (Figure 3). Currently classified as “Least Concern” according to the IUCN (Figure 4), there is currently no evidence of serious threats to its global breeding population. In fact, some argue that an increase in fishery activities could have positive effects through a greater supply of discards, and less competition for food resources (Creuwels et al., 2007). The future remains bright for the Southern fulmar!

The Souther fulmar has an extremely large range and population size, with a stable population trend.

Figure 4: Based on its most recent classification, the Southern fulmar has an extremely large range and population size, with a stable population trend (IUCN, 2016).

 

References:

Creuwels, JC, Poncet, S, Hodum, PJ, & van Franeker, JA (2007). Distribution and abundance of the Southern Fulmar Fulmarus glacialoides. Polar Biology 30 (9): 1083–1097.

Croxall JP, Prince PA, Hunter I, McInnes SJ, Copestake PG (1984) The seabirds of the Antarctic Peninsula, islands of the Scotia Sea and Antarctic continent between 80°W and 20°W: their status and conservation. In: Croxall JP, Evans PGH, Schreiber RW (eds.) Status and conservation of the world’s seabirds. ICBP, Cambridge, pp 637–666.

IUCN – BirdLife International and Handbook of the Birds of the World (2016) Fulmarus glacialoides. The IUCN Red List of Threatened Species. Version 2016-3.

Nunn GB, Stanley SE (1998) Body size effects and rates of cytochrome-b evolution in tube-nosed seabirds. Mol Biol Evol 15: 1360–1371.

Science Uncovered 2016

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After having a great time showcasing our research last year, we were invited back to take part in the Natural History Museum’s offerings for European Researcher’s Night 2016.

IMG_8574-2IMG_8589

One of the best parts of our role as Research Assistants is the freedom to work with the museum’s collections everyday, moving across all taxa and, at times, preparation methods (study skins, spirit and skeleton specimens) as data collection requires. Without access to such incredible collections, wide-ranging studies such as ours simply wouldn’t be possible and the importance of highlighting the many uses of such diverse and well-maintained resources is becoming increasingly important. When they were collected, primarily during the heyday of Victorian exploration and collecting, nobody could have anticipated the ways in which these specimens would be used. Yet, by preserving them for future generations, this historical material can now be utilised in contemporary science projects, continuing to help us understand the evolving biodiversity of the planet.IMG_8576

There’s no better way to show this than with the real thing so we selected an array of study skins- exactly like those kept in the natural history museum’s ornithology research collections and used in our study- for people to explore up close. Alongside these were a selection of skulls from the museum’s handling collections, ranging from the large, stocky bill of the marabou stork and the curved, pointed bill of the kestrel to the filter feeding bill of a flamingo and the mud-probing bill of an ibis.

With our portable 3D scanner in tow, we were alsIMG_8578o able to give live scanning demonstrations with anyone welcome to have a go at creating their own 3D digital bill model- not as easy as it looks! By demonstrating how we move from a physical specimen to a detailed digital replica it becomes clear why this is only possible with study skins- it would be practically and logistically impossible to replicate this process with living birds in the field.

One of the great things about talking to the public about our research in particular is that anyone interested can actually become a citizen scientist and contribute to the study through the wonders of our crowdsourcing site markmybird.org. With over three-quarters of world bird species now uploaded, there are thousands of bills to explore up-close via our gallery as well as opportunities for anyone to have a go at landmarking our 3D scans, assisting with our analysis and helping answer key questions about avian evolution.

In addition to our stand, Principal Investigator Gavin Thomas gave a talk introducing our research and its reliance on ornithology collections. Situated in thIMG_8588e public galleries of the Natural History Museum at Tring- a Victorian zoological collection and display space donated to the NHM by its founder, Walter Rothschild- it was a great opportunity to highlight the value of largely unseen research collections and highlight the questions we are hoping to answer.

Alongside our offerings were demonstrations from expert taxidermists showing how museum specimens are preserved and the opportunity to see some of the manuscript treasures of the Natural History Museum being made available through the digitisation efforts of the amazing Biodiversity Heritage Library. There was also the opportunityscarlet rumped trogon drawing to talk to curators about contemporary museum issues: from a stand exploring the use of bird skins in helping identify material picked up by HM Customs, blocking aircraft engines or contaminating foods to discussions concerning how natural history museums deal with selecting (and declining) new acquisitions.

You can learn more about European Researcher’s Night here, the Natural History Museum at Tring here and us on our team website, twitter and crowdsourcing site!

 

 

Lab Updates August 2016

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It’s been another month of change here at Team MacroBird with two of our original team members moving on to adventures anew.

14100385_10104845417626067_3774523421000460044_nPost-doc Jen Bright (green t-shirt, thumbs up), geometric morphometrics whizz and all-round human-encyclopedia, is taking up a new post as Assistant Professor of Geosciences at the University of South Florida.

Research assistant Elliot Capp (cheesy grin, beard), mechscan master, brains behind #beakoftheweek and all round zoology ace is off to become a teacher extraordinaire.

To mark these departures, all of us on team MacroBird went on a trip to South Kensington to see the new Colour and Vision exhibition at the Natural History Museum. We saw the octopus Charles Darwin kept as a pet during the voyage of HMS Beagle, lots of very cool trilobites, some impressive iridescent butterflies, plenty of birds (Gouldian finches galore) and learnt that ‘cyborg artist’ is someone’s actual job title.

Colour & Vision

Data Collection in Tring: 3D scanning

With all this change on the horizon, we’ve been pushing to meet as many data collection targets as possible. This involves progressing through remaining large families and returning to those we moved on from whilst nearing completion.

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3D Scan of Mauritius Kestrel (Falco punctatus) from www.markmybird.org

One such example is the birds of prey which are, in general, great to scan. Although some genera have obstructing feathers and bristles, most have clear landmarks and well-defined ‘cutting edges’ that are clearly picked up by our scanners. One of the last non-passerine families in need of completing were the Falcons and Caracaras (Falconidae) – with all the larger species having already been imaged on the bigger of our two scanners (the R3X) we still had a number of significantly smaller, finer bills remaining. After what feels like months of Hummingbirds (Trochilidae) and Sunbirds (Nectariniidae), finishing a family with such chunky, nonlinear bills was a breeze!

On the other end of the scale, we had some really big species that needed our attention. Both the Rheas (Rheidae) and the Cassowaries (Casuariidae), two of the tallest and heaviest living birds, are primarily stored as either mounted taxidermy or in a compact, curled-up form within the collections due to their size and shape. Selecting a specimen suitable for scanning can be a real challenge as we need to access the bill from all angles in order to capture enough images to build a 3D model. Rather than simply rotating the specimen (as we do with small passerines for example) we have to get a bit creative and move the scanner around these huge specimens, carefully manoeuvring the long, brittle necks to ensure no damage is caused. In moments like this, such as scanning the last of the cassowaries (below), we realise just how peculiar parts of our job are…

cassowary

Data Collection in Tring: UV photography

This month we’ve been photographing the plumage of some really interesting species- with the Pittas (Pittidae) being a particular favourite.

The Pittas are a small family of charismatic birds found across Asia, Africa and Australasia. They are small-medium in size and stocky in form with very short tails and comparatively long legs. What really sets them apart from other species is their brightly coloured plumage (particularly interesting for this element of our research), in vivid shades of red, blue and purple. In the wild, Pittas are notoriously difficult to pinpoint as they are highly secretive and perhaps because of this, they often feature on lists of species birders particularly want to see (including one or two members of our team!). 

Being able to access these species within museum collections allows us to use an ultraviolet filter when photographing the specimens, which provides us with a different perspective of this fantastic plumage. Certain patches of colour positively glow- as you can see from our images of the Azure-breasted Pitta (Pitta steerii) below. 

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MarkMyBird and #BeakoftheWeek

We’ve recently been experiencing some technical problems with our crowd sourcing website markmybird– thank you to everyone for being so patient and for keeping us updated. Everything is now up-and-running again and we’ve uploaded more than a thousand new 3D bill models for you to view and landmark, even more reason to revisit or sign up and give citizen science a try!

black-winged stilt

Our weekly twitter competition #BeakoftheWeek has seen some great picks this month, including a number of first-time guessers and winners. Chris Packham was successful in spotting the black-winged stilt (above) in record time, followed by the hen harrier in his honour. There are still thousands of species to pick from so the competition is far from over, join us on twitter every Wednesday and give it a go.

Images

All images (c) of Team Macrobird and The Natural History Museum